DreALTD0012265-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22439513-22441640:-
Coord C1 exon
chr21:22441556-22441640
Coord A exon
NA
Coord C2 exon
chr21:22439513-22439658
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GTGTGTGTTGTGTCTCTCAGATC
3' ss Score
11.35
Exon sequences
Seq C1 exon
AGGGTGGAGGAGCTTGAGAAAGAAAACACAGTCTTGAAGAAGGAAAAAGAAGAGATGAACCGCAGAATCCAAACCTCTACTCAGG
Seq A exon
NA
Seq C2 exon
ATCAGGGAGGTGATGTGTCTCAGAAGGAGAGTCGCCTGCAGCATGAACTGGATGACGAGAGACAACGATATCAGAACCTGGTGAAAGAATATTCCCGACTGGAGCAGAGATACGAAAACCTGCAGGAGGACATGTCTTCAATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-26-24,27-24-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.898
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTGGAGGAGCTTGAGAAA
R:
TTCATTGAAGACATGTCCTCCTGC
Band lengths:
230-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]