DreALTD0012266-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000062003 | myo5b
Description
myosin VB [Source:ZFIN;Acc:ZDB-GENE-031219-7]
Coordinates
chr21:22430507-22435778:-
Coord C1 exon
chr21:22435719-22435778
Coord A exon
chr21:22435611-22435718
Coord C2 exon
chr21:22430507-22430746
Length
108 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AAAATGTGTTCTTTTTACAGCGG
3' ss Score
9.05
Exon sequences
Seq C1 exon
GCCAAGAACTCAACGTCAGAGGACGATATAAACGCAGACCTGGCCTACAACAGTCTGAAG
Seq A exon
GTAAGAGTCAGTGCTGACGGTCAAATGTCTGTCTTGGTGCTTGTTGATTTATTCTGCACTTCGGCCGCTCTGTTGCTGTTGCTCATCGTGCTGCCTGTTAAACTGTGG
Seq C2 exon
CGGCAAGAGCTCGAAACAGAGAATAAGAAGTTGAAGAATGACCTTAATGAGTTAAGGAAAGCAGTGGCCGACAGGGCCTCTGAGAACAACTCATCCAATGAGCTTCAAGATGGCTACAACCTGCTGCTCAGTCAGCTCAAAGCGGCCAATGAGGAGCTGGATGTGCGCAAGGAGGAGGTCCTGATGCTCAAGACCCAGATCGTCAACTCAACAAGACAGACAGAAAACTTAAACCACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062003-32-31,33-31-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.657
Domain overlap (PFAM):
C1:
PF102794=Latarcin=PU(8.5=58.3)
A:
NA
C2:
PF102794=Latarcin=FE(48.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATATAAACGCAGACCTGGC
R:
TGACGATCTGGGTCTTGAGCA
Band lengths:
243-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]