DreALTD0012272-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3147638-3150545:+
Coord C1 exon
chr18:3147638-3147727
Coord A exon
chr18:3147728-3147814
Coord C2 exon
chr18:3150418-3150545
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TCTGTTTGTTTGGCCTTTAGGTA
3' ss Score
9.78
Exon sequences
Seq C1 exon
AACACTAACATTGAGAGTCACAAGAAGAGCAGCGTGCGGCACAAACTGGTGTCGCTCACCCTGAAGAAGAAGTCTAAAATTACAGAGGAG
Seq A exon
GTCAGTGATGCTCATTTTATCATGTGCATCTCCCTATTCTTCTCTTTCTGGAAGCTCAGCAACCCCTTCAAGACACTCATTTCACAG
Seq C2 exon
GTAACCAAGCGTTTAAATGACGGGGAATACACTGTTCATGGAAACAGCATGTTGGAGGATCGACCCACGTCCAATCTGGAGAAACTGCACTTTATCATCGGCAACGGCATCCTGCGTCCAGGCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-27-26,28-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=NA C2=0.163
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0078412=MyTH4=PU(18.9=46.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCACAAGAAGAGCAGCGTG
R:
CCGTTGCCGATGATAAAGTGC
Band lengths:
182-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]