DreALTD0012601-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000037963 | nek6
Description
NIMA-related kinase 6 [Source:ZFIN;Acc:ZDB-GENE-040724-133]
Coordinates
chr21:8279632-8304791:-
Coord C1 exon
chr21:8304691-8304791
Coord A exon
chr21:8304454-8304690
Coord C2 exon
chr21:8279632-8279691
Length
237 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCTTTTGTGTTTTTCTGTAGGTC
3' ss Score
12.48
Exon sequences
Seq C1 exon
GGTGTGACTCAAACTTGCGTGGCCCGTGACATTAATGAGACTGGAAAGAGACCAAACCGTCTTCGCAGCAGTTTTCAGCTCTGTAAATGTGCGCCGGAGAG
Seq A exon
GTAAGTGCAAGACTATACGCGACTTTTAACCCACTTTGTTAAAAACACGATGCTCGTGACGTGCGCGCGCCTCGCGATACTCAGTCATACAGTTGCACAACGTGTTCATGCAGAAGAGAAAGACTGTGTACCAGTGTTATTTTTCAACAGCATAATACCACTGTCTAGCTATCTGAATAAACACAAGTCTGCCTTATAACCCTCACATGGGCTTAAAATCTACATGAACAACTCCAG
Seq C2 exon
GTCTGGAATGTCATTATGGAGCAGAACAGCCTTCAAGATCAGAATAAAAATTACAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037963-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGTGACTCAAACTTGCGTG
R:
TTATTCTGATCTTGAAGGCTGTTCTG
Band lengths:
148-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]