DreALTD0013295-1/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28677767-28680091:-
Coord C1 exon
chr12:28679991-28680091
Coord A exon
NA
Coord C2 exon
chr12:28677767-28677975
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CAAATGTTTGTGTTTTGCAGACA
3' ss Score
8.98
Exon sequences
Seq C1 exon
AATACGGATAATGATTTGGCCTGAAGCCTATGGTGGATTTGGAGGATGTTCAGTCACCAGTGAAGGAGAGTTTGAGTGCTGTCTCGCCACACGGTGTTCTG
Seq A exon
NA
Seq C2 exon
ACATATTGTGCTCTAGTGGACAATGAGAGGAAGTCTCTAGTAGAGCTTATATTTACACAGAGCTTGACTATTAAGTGCAAACTTTCACAATGGACTCAGTGGATCATAATCAGTCCCACATGAGTGGTGTGGAGAAGGTGTCCAGCGGCTGGCAGAAACCCAGTCATTCTAGGAGCAGCAGCACGGCATCTTCACGCCACTCACGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-1-0,2-0,3-0,4-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.925
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAAGCCTATGGTGGATT
R:
AATGACTGGGTTTCTGCCAGC
Band lengths:
251-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]