DreALTD0013479-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51106514-51110237:-
Coord C1 exon
chr17:51110137-51110237
Coord A exon
NA
Coord C2 exon
chr17:51106514-51106616
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TTTGTTTGTGTCTGTTTGAGCAC
3' ss Score
2.64
Exon sequences
Seq C1 exon
TGTGTGTGTGAGAGAGAGAGAGAGAGTCAGTGCGGGTTCAGAGAGCGGATTCACCCGCGGGAGATGCAAACAGCTCGGTTTTCTTTCGACAGCAACAAATA
Seq A exon
NA
Seq C2 exon
CACGCACACCTTCAGGGCCTTTTGCAAATCAACAGAAGACTAACACACACCTCTGTGTGTTGCAGGACGCTGGGTGTGTGAGCGCTGAATCGGCCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTGTGAGAGAGAGAGAGA
R:
CTGTCTGGGGCCGATTCAG
Band lengths:
204-314
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]