DreALTD0013705-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000051915 | pde5ab
Description
phosphodiesterase 5A, cGMP-specific, b [Source:ZFIN;Acc:ZDB-GENE-060824-4]
Coordinates
chr7:57282739-57289996:+
Coord C1 exon
chr7:57282739-57282789
Coord A exon
NA
Coord C2 exon
chr7:57289850-57289996
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
GGCCTGTCCTACTTCCACAGGCA
3' ss Score
9.43
Exon sequences
Seq C1 exon
GTCCTCTCTTATCATGCCTCCGCTGCGGAGGAAGAGACGCGGGCGCTCCAG
Seq A exon
NA
Seq C2 exon
GCAGCTACGATCCCCTCCGCTCAGTCTCTCAGACTGATGGACTACAGTTTCAGTGATTTTGACCTGACAGATGCTGAGACGACCCAGGCAACCATCCGCATGTTTGTGGACCTCAAGCTTGTGCAGAATTTTCAGATAAAGTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051915-11-12,13-12-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTATCATGCCTCCGCTGC
R:
ACTGTAGTCCATCAGTCTGAGAGA
Band lengths:
94-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]