DreALTD0014124-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000045331 | pkp4
Description
plakophilin 4 [Source:ZFIN;Acc:ZDB-GENE-120411-14]
Coordinates
chr6:12015686-12019544:-
Coord C1 exon
chr6:12019428-12019544
Coord A exon
NA
Coord C2 exon
chr6:12015686-12015882
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
3' ss Seq
TGTTGTTCTCGCTTGCTCAGGGT
3' ss Score
9.21
Exon sequences
Seq C1 exon
AATCCTCAGGTGCAGGTGTGTCTAAGCCGTCGGATGGTTGCCCCTCACCGACATTTGGAGTCAGAGGTCAAGGGTCACTTTACTCTCCTGAACTGGAACAGATCTCCCTACGTGAAA
Seq A exon
NA
Seq C2 exon
GGTCTGCTGCAAACTCGCGCAGCTCGACTCAGATGAATTCCTACTCAGATAGCGGATATCAGGAGGTGAGCGGTTACTACAGTAACACGGTGACGCCCAGGCGGTCTGAAGGGAGGTCACAGTCGACCAGCTCCGCCCCCAGCGGAAGCCCCACCCTCGCCATGAGCTCCAGGGCTGAAGGACAGGCCTCTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045331-7-4,8-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAGAGGTCAAGGGTCA
R:
ATTCATCTGAGTCGAGCTGCG
Band lengths:
99-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]