DreALTD0014145-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000039145 | plaub
Description
plasminogen activator, urokinase b [Source:ZFIN;Acc:ZDB-GENE-030619-15]
Coordinates
chr12:46752016-46752678:+
Coord C1 exon
chr12:46752016-46752077
Coord A exon
chr12:46752078-46752083
Coord C2 exon
chr12:46752633-46752678
Length
6 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
TAACTTGTTGTGATTTCCAGAAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
GTAGAGGCGAGATGTCTGGAATTCTCGTGTGGAGTTTGATTCTGGCTTTAACAGCTCTCACG
Seq A exon
GTGTGT
Seq C2 exon
AAAGCTCAGCGCAGACCCTTTCCCAGTGAATCCCATGATAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039145-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGATGTCTGGAATTCTCG
R:
TGGGATTCACTGGGAAAGGGT
Band lengths:
92-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]