DreALTD0014850-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000031494 | prrc2a
Description
proline-rich coiled-coil 2A [Source:ZFIN;Acc:ZDB-GENE-010501-4]
Coordinates
chr19:27174457-27185688:-
Coord C1 exon
chr19:27185588-27185688
Coord A exon
NA
Coord C2 exon
chr19:27174457-27174608
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
TCAATCTCTTTCTCTTTCAGTCT
3' ss Score
11.22
Exon sequences
Seq C1 exon
GAAGCCGTTGACGGCTCTAATAGTGACGGATCGACCCCCGCAATATTATTTTATTTTTCCTTTTTCATTTGTTTTGTGGAAAAAAAGAAAAAGGAGTACAA
Seq A exon
NA
Seq C2 exon
TCTCAGGACTCACCATACTCAATGAGCGTACAGCGCAATGTCAGAGCGCTCTGGGCAAACGGCAAAGGGGAAGGATGGCAAAACCAAGTATGCGTCTCTCAACCTGTTTGATACCTACAAAGGAAAGAGCCTTGAAGCACAGAAGCCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031494-0-1,1-1,2-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.805
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF070016=BAT2_N=PU(19.7=97.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGCTCTAATAGTGACGGA
R:
ACTGGCTTCTGTGCTTCAAGG
Band lengths:
243-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]