DreALTD0015525-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10959292-10959794:+
Coord C1 exon
chr11:10959292-10959398
Coord A exon
NA
Coord C2 exon
chr11:10959748-10959794
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
ACTTATTTTACTCTCTTTAGAGC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GTGCATCAGAGCCATTGCTGTGTAAGTTTGCTGACGGCGGGCAGAAGAAGAGACAGAGTCAGGCTAAATACATCCCCAATGGACGAACCTGGACAAGAGACGCCGAG
Seq A exon
NA
Seq C2 exon
AGCGGCATGACTTTGACCTATGACCCCAATACCGCCCTTCAGAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023-12-8,13-8-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAGAAGAAGAGACAGAG
R:
AGGGCGGTATTGGGGTCATAG
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]