DreALTD0015658-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000005989 | rgl1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
Coordinates
chr8:19252727-19254976:-
Coord C1 exon
chr8:19253659-19254976
Coord A exon
NA
Coord C2 exon
chr8:19252727-19253624
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATTGTGCGT
5' ss Score
3.71
3' ss Seq
GTGTGTGTGTATATGTGTTTGTG
3' ss Score
-9.82
Exon sequences
Seq C1 exon
GATCTCAATAGCTACCATTTTCCAACTAATTTCCAAAAGGTTTTCAAAACACTATTGGGTGAGAAAATAGTAAGTAAATTTTCATTTTTGGGTGAACTATCCCCTAAAATGCTTAGACTGGCTCACTAAGAACTCCTATTTTGAGGCCAAACTTGAGAATAAATAAATAGTTTGTGCTAGATATTATAATTAATAGATATATACGTTTAAAAAAGTCTTAAACCTCATGTCTGCCTATATTCTCTCTGCCTAATCTAAGCATTTTATTTCTATTTCTGTATTTCTCATATTGTGAGCTGCATGACGAATGCCTTAAATGCGTTCTGATTGGTTCCTGCTTGGTTTTATCAAGTCTGTGGTGTTTGTTTGTTTTCACTGTTTTCAGGGTGTGTCTTTAAGGTGTGGTTACAAGCACCGATAGGATGGGTTTCTGTTCAGAAACCTGGATTGAGTCGCCTTCCTCACTGATACAGTGGCACTTCCTGTGGAGTGGACAGATT
Seq A exon
NA
Seq C2 exon
GTGTGTGTGTGTGTGTGTGTGTTGAGTGTGTATGCTAGATGGAGCGCTTGGTCCACTTTTTTTGTAGCTTTCCTGTCTTTTTTTCTTCAGGCAGTGCTATATTAATGGTATACTTTTCTTTTATATATATGAATGCGTGTATGTTTTTTGTAAGAGATGAAGAATTATCCATGATTTCTATGAAAAAAAGGAAGTTTTAAAGAGATTTTGTTAACTAAAAAAAGAAAAAATGTAAAAAGCTGTGAAATATGAGTGTGTGTGATTGTAAAGTGAGCATTAAAACAAGTCAGATATTTCCATTAACCAGCAGAAATATTCAATTGTACCCCTGTTGCCAACATTTTCCAGAGCCTTTAATACCTTTAAGACTTTGTACACCTGGTGAATATCAGTTCACAAATGCATGTTTTACACTGTGGCGTATTAACATCAAAAGGTTTCAGAGTTTCAAAAGGCTTTTTTTTGTTCTTAATCCTGTTTGTTCTCTACATAATTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005989-28-27,29-27-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(31.8=44.4)
A:
NA
C2:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGTGGCACTTCCTGTGGA
R:
AAAAAGTGGACCAAGCGCTCC
Band lengths:
93-105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]