DreALTD0016516-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000043497 | scrn2
Description
secernin 2 [Source:ZFIN;Acc:ZDB-GENE-040724-75]
Coordinates
chr20:14739445-14740089:-
Coord C1 exon
chr20:14739933-14740089
Coord A exon
chr20:14739931-14739932
Coord C2 exon
chr20:14739445-14739850
Length
2 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
3' ss Seq
AACCTGTGGCTGTTTTGCAGTTG
3' ss Score
6.65
Exon sequences
Seq C1 exon
GATGCTGGAGTCTCTCTACAGGACACTATGAGGTACCTTGAGTCCCAGTGTCTGGAGGAGATCGAGGCCATGCTGAGAGGCGAGGTTCAGGGCCAGGAGCTTGGGGATCTGTTCTTCGACTGTGTGGACGCCGAGATCAAATTCTACCAGTGAAACA
Seq A exon
GT
Seq C2 exon
TTGTAATTGTGATTGTCACTAGTGCTTGCTGATCTGCCTGGAGAGAGAACGAGAAAGACAGAGAGTCCAGAGCGCACAGGTTCCTGCCTGCTCTCCTAGTTCCCCTGATGCCATGCCAAACTAATCGTGATGTCCATGCCACACTAACTGTAACTTTAAAAACACACACACATTAGATGTTGATGTGAGTGGATCACCATAACCATGTGTAATTGTCACCCAGGGTGTTCATATATGCATCACATTAACCGGTTTGTGATAGATTACTAAGGTGTGTATGTGCTGTGGGTAGATGTGTGAGAGAGATGTTAGTCAAAAACACTTCTCATTCCTGTAAGAGACGGGCTCAGCCACCAGACTGACCCTCTGAGGAGAAACACAATAAAATGTCCATGGTTCAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043497-8-13,9-13,10-13-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTTCGACTGTGTGGACG
R:
TCTCTCTCCAGGCAGATCAGC
Band lengths:
96-98
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]