DreALTD0016557-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23829528-23831373:-
Coord C1 exon
chr6:23831273-23831373
Coord A exon
NA
Coord C2 exon
chr6:23829528-23829822
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
GCGTGTGCGTGTGTGTGCAGTTT
3' ss Score
6.45
Exon sequences
Seq C1 exon
CACAATGGTTCCGCACGACGTGGCAACTTCAAATACTCCGAATATGGGATTGAGCACAGAAAGCCAGGGGCGCCTGTCAAACAGCTGTATGCAAACACACT
Seq A exon
NA
Seq C2 exon
TTTTTTTTTAGGTTTATCCAGTTCTGTGTCTCATGATGGAGCCCAGAAGGGAAGGCTGGCGCATGCCAGGCTATCAGTACCAATCTAGTGACAGAGATGACCACTACAGATCCTCACATCAATCACAGTATTACTACCCACCAACAGAGTCGAGAGGGAGAGAAAGACAGTGGCAGCAGGTCGATCCTCGTTATGGAAGCTACATGACCAGTCCTCCTCCTAAACCAGAGTATATTCCTGGATATAGCAGCGCTTATGCATCCAACCAACCCTTACACTTCAGACCACACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.852
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGACGTGGCAACTTCAAAT
R:
TTGGTTGGATGCATAAGCGCT
Band lengths:
357-756
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]