DreALTD0016774-1/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22105475-22107958:-
Coord C1 exon
chr16:22107801-22107958
Coord A exon
NA
Coord C2 exon
chr16:22105475-22105707
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
GTTTTCTTTTTTTTTTCAAGTGC
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATGACCAGTGAATTATCAAAATATTAAAAACAACTACATTACTAAAATGTCACGGATATAAGAGAAAACTTTAAACGCACTACCGTTTGTTTACCTGTCATTTGAGGCACGGCGGAAACGAGAAAAATCACAAAGGGCTGGAGGCGGCGACACGTTAG
Seq A exon
NA
Seq C2 exon
TGCATGGAAGTGGATGCAGGTTTAAACTCAGGGATGGAGATGGAGCTGGAACCAGAGTTGGAGGAGGAGTTAGGAGTGTCTTTGGATGAGCTGCGCAAGTGGATCGAGGAGCAGGTGGACAGCAGCGAGGCTGTGCAGAAGAGGAAAGCTGATCTGGAGCAGCTGCAGGAGTGGGTTGAGCAGCGTGAGAAGGAGGTTGCTGATATCGATGCTCTTTGCTCCAATGCCTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-4-8,5-8,6-8,7-8-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.299
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF135141=AAA_27=PU(76.3=96.1),PF051497=Flagellar_rod=PU(73.6=83.1),PF141821=YgaB=PU(83.1=76.6),PF092786=MerR-DNA-bind=WD(100=68.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCACAAAGGGCTGGAGGC
R:
CCTCCTCCAACTCTGGTTCCA
Band lengths:
101-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]