DreALTD0017867-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000057010 | si:dkey-154b15.1
Description
si:dkey-154b15.1 [Source:ZFIN;Acc:ZDB-GENE-060503-52]
Coordinates
chr19:25170045-25172552:-
Coord C1 exon
chr19:25172512-25172552
Coord A exon
chr19:25172504-25172511
Coord C2 exon
chr19:25170045-25170235
Length
8 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
AACAGTTATTCATTGCTCAGTTT
3' ss Score
2.9
Exon sequences
Seq C1 exon
TGAGGAACGCTGGCTTTGCTGCGATGTTGGATCATAAATTG
Seq A exon
GTAATCAA
Seq C2 exon
TTTTAGGATGGACATGACGGGAATGGTTATTGAAGTGAATGGGCTCCCGGACAGCTACCGAGAAGATGCAATGATTGACAAATTAACTATCCATTTTCTGAGGCGCTGTAACAAAGGAGAAGATGTTTTAACAGTGATTTATCCCACTTCCAACAAGGGCCAGGCTTATGTAGTCTTTGAATCAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057010-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF072928=NID=WD(100=65.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGCTGCGATGTTGGATC
R:
ATCTTCTCGGTAGCTGTCCGG
Band lengths:
96-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]