DreALTD0017879-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000091602 | si:dkey-163f14.6
Description
si:dkey-163f14.6 [Source:ZFIN;Acc:ZDB-GENE-141215-18]
Coordinates
chr11:30035760-30038747:+
Coord C1 exon
chr11:30035760-30035929
Coord A exon
chr11:30035930-30035933
Coord C2 exon
chr11:30038583-30038747
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAT
5' ss Score
6.62
3' ss Seq
TAATTTGTTCTGTACTTTAGCAT
3' ss Score
6.73
Exon sequences
Seq C1 exon
GTTCTGCTGATAAAGGCTGCAGTGGCTTTGGGCACTTGGAAAATGGACGTATGTTCTTCCGCTATGGAGGATTGTATGTTACCTTCACCTGTAATCCAGGATTTCGGATACACGGTTACCGTACTAGCAGTTGTGTGTCCGGACAGTGGGCTAGAGATCCTCCGCTATGT
Seq A exon
GTAG
Seq C2 exon
CATCAGGATGCCCAGGTCCAGGTGATCTCCTGCATGGCAGCGCTGTGGTGTCTAGAGACAGATCTCTGGCATCCTTCAGCTGTGATGCTGGATTCTATTTGTCTGGATCTGCACTGCTCTACTGCAAGGGGAAAAACTGGAACAGCACTAAACCTGTCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091602-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=81.4)
A:
NA
C2:
PF0008415=Sushi=WD(100=91.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTAGAGATCCTCCGCTAT
R:
CACAGCTGAAGGATGCCAGAG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]