DreALTD0018347-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000091465 | si:dkey-66a8.7
Description
si:dkey-66a8.7 [Source:ZFIN;Acc:ZDB-GENE-131127-421]
Coordinates
chr6:37479718-37481909:-
Coord C1 exon
chr6:37481769-37481909
Coord A exon
chr6:37481736-37481768
Coord C2 exon
chr6:37479718-37479854
Length
33 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GATCCTTCATTTGCTTTCAGGTA
3' ss Score
9.55
Exon sequences
Seq C1 exon
ATGCAGTTTTAAAGAGTGTGTGTTTTTTACACTCCGGTAAACTTATGGAACAAATCCGAGAGGATGACAACCAAGAAGACTGGATGTCACGTTTACCAGAAAAACTGTTGGATATCCCTTTAACAAATCTCGCTATACCAG
Seq A exon
GTGAGACTATGAAAACTATAGGTGAATCAAAAG
Seq C2 exon
GTAGCCATGATGCAATGAGCTACTGTCTAGATATCAATTCTCCACTGCTCCGGTCTGAATCAGACACCTTCAGGTTACTGGATGGAGTTTTCTACTGTTTCACCCGACCATTCATTTACAGATGGGCCACTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000091465-2-2,3-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0038814=PI-PLC-X=PU(10.7=30.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATGTCACGTTTACCAGA
R:
GACCGGAGCAGTGGAGAATTG
Band lengths:
118-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]