DreALTD0018388-1/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078018 | si:dkey-79d12.4
Description
si:dkey-79d12.4 [Source:ZFIN;Acc:ZDB-GENE-131119-45]
Coordinates
chr16:24818799-24819420:+
Coord C1 exon
chr16:24818799-24818899
Coord A exon
NA
Coord C2 exon
chr16:24819316-24819420
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAGA
5' ss Score
10.53
3' ss Seq
ATTCCACCCTGTTGCTTCAGGTT
3' ss Score
8.78
Exon sequences
Seq C1 exon
TAGGAGACGTACTCGCGCGTGCGTGCAGGAACTGAGGGAGGAGCTACAACCAAAACACGAAAATTATTAAAGAAATCGAATTATTCTCAGTAAATTCCTCG
Seq A exon
NA
Seq C2 exon
GTTAAAACAGGTGCTAATATGGAAGTCTTGCCGTTTGAGAAGGTGGAGCGTGTTGTTGGTGCCAGAAAGAAACTGCAGCAGAAAGCTCTTTACATTCAGAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078018-1-0,2-0,3-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGAGACGTACTCGCGCG
R:
AGTTCTGAATGTAAAGAGCTTTCTGC
Band lengths:
204-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]