DreALTD0019048-3/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000004246 | slit2
Description
slit homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-010306-3]
Coordinates
chr1:23158115-23158714:+
Coord C1 exon
chr1:23158115-23158186
Coord A exon
chr1:23158187-23158520
Coord C2 exon
chr1:23158643-23158714
Length
334 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGG
5' ss Score
3.6
3' ss Seq
TCTGTGATTTTCTCTCTCAGGCA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GGACCTGAGTGAAAATCAAATCCAGGGGATTCCCAGAAAAGCCTTCAGAGGATCTACAGAGATCAAAAACCT
Seq A exon
GTGAGTGTTCTGTGTATACTGTATATGTGTAAAAGAGAGAGGGAAATAGAGCTTTACATTAATGATAGTGTGCGTTAATGAGGTGCCCCGGCAAACTGACCATCATGAACACACACACACACACACACACACACACATATATACGCACACAGATGGGAGGAGTGGGCAGCGCAGGTACTGTAGACAATAGTGGAGGAGAGCACAGCAGACACAGTGTGGAGGCAGGAAACTGGAGGACAGAGAAAGAGAAAAAGACAGTGACAACAAAATGAGAGAGAGAGACAAGAAAGACAGACTGAAGGATGGAAGCGTGAAACATGCAAGTTGTTTATTA
Seq C2 exon
GCAGCTGGACTATAATCAGATTTCCTGCATTGAAGATGGAGCGTTCAGAGCTCTGCGGGACTTAGAAGTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004246-6-6,7-6,8-6-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PU(8.2=20.0)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]