DreALTD0019707-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000036913 | st6galnac6
Description
ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:ZFIN;Acc:ZDB-GENE-060322-7]
Coordinates
chr21:3675110-3680825:-
Coord C1 exon
chr21:3680725-3680825
Coord A exon
chr21:3680582-3680724
Coord C2 exon
chr21:3675110-3675171
Length
143 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTCTCAATCTCTCTCTCCAGGCA
3' ss Score
11.65
Exon sequences
Seq C1 exon
AAGAACTGACTGATAGTGATGATTATGGTTGTGATGATGATGGTGATGATAATAATGCTGCGCGGATACAACAACATCCACAATAAACCCCTGACGCAACG
Seq A exon
GTAAGAAAAACGCTCATCCGACGTCGACTGACTAGCTTCAACAATCGCTTCTCCCGCAATATCAGACGCGCTTTGACGATCAAGCAGAGCCTCAGCATCAGCATTATATACATCATGTCTGCGTGTTGGATGGATTTTGACAG
Seq C2 exon
GCATGAGAACTGAAACCTGATAGAAGGGTGGCAGGAGAATGACACTGCAGCTCGTAGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036913-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGACTGATAGTGATGATTATGG
R:
ACGAGCTGCAGTGTCATTCTC
Band lengths:
154-297
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]