DreALTD0020117-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000077073 | tanc1a
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a [Source:ZFIN;Acc:ZDB-GENE-130530-819]
Coordinates
chr6:11906984-11937561:-
Coord C1 exon
chr6:11937460-11937561
Coord A exon
chr6:11937456-11937459
Coord C2 exon
chr6:11906984-11907205
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTTTGTCAATTGTTATGTAGGCA
3' ss Score
6.53
Exon sequences
Seq C1 exon
AAGGACTGCAGTTCTTCACAGATCGAAGGTGGGAATTGAGCCATGTTTAAGGCAGTTCTGAAGAAGGGTCGAGAGGGAGGAGGACGAGCTAGCAAAAGAGAT
Seq A exon
GCAG
Seq C2 exon
GCAGTCAGCCTCTGAGCCCCAGTTTCCATCAGAGGTTTGAAGAGCAGGGGATTGTGGGTGTTCAGGATCGGGGCAGTGTGCTTCTTCCAGTACAGCCGTATCCAGCAGAGGAGATGCTGAGGCCTAGTCTGACCAGAGGAGTGTCCGTCTCTCTACCCTCCTCCCCGCTGCTGCCTCCCAGACAACCATACCTGTCACCCGTCCGGACCAATAAGTCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077073-2-4,3-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.864 A=NA C2=0.720
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTTCTGAAGAAGGGTCG
R:
TCCCCTGCTCTTCAAACCTCT
Band lengths:
103-107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]