DreALTD0020484-4/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000087780 | tiam2a
Description
T-cell lymphoma invasion and metastasis 2a [Source:ZFIN;Acc:ZDB-GENE-030219-98]
Coordinates
chr17:48999017-49008768:+
Coord C1 exon
chr17:48999017-48999117
Coord A exon
chr17:48999118-48999461
Coord C2 exon
chr17:49008686-49008768
Length
344 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GATTTTTTTTTGTCCCACAGAAA
3' ss Score
10.49
Exon sequences
Seq C1 exon
TCCTTTCCCCCCCTGCTTATTTTCTCCTACTGCCCTTCCTCCTGCCCTGCGCTTTCAGTGTGGGGGTGATGGTGTTACGCAGGGTCAGATAGCACATTCTG
Seq A exon
GTGAGTGCTAAACCTCCATGGGAAATAGCTGGGGGTTCAGCTTTGACCACAGGTAACTTCAGCTGAACATAAGGAGCACTAACCGGCTTAAAAAAAACAACAACGACTAGAAACACTGGCTTGTTTGTAGCACCAGACATCAGTTTTTCCTCTCACGCCAAATCAGTGGCGTCCAGAGAAGGAGTCACTCGCAGACTGGGAGGGAGTTTCCACGTGTGCGCGTGTGCTTTTGTGAGTCATTTCGTCTTGGTTCAAGTACGTGTCTTTCTGTGGGAGCTTGAGATCAGGCAGACCGATTTTGTCTTGCCTTTCAAAGCATCATAGATGAAAGCTTTTCCTCAAAG
Seq C2 exon
AAAACCACAAGAGAACTGGACTGTAAGAGGGAGAAAATGATGGCTGTGCAGACAACGAGGCCATAAGAGGCCTGAATACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087780-0-0,1-0,2-0,3-0-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]