DreALTD0020557-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000042467 | tlk1a
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3597829-3598544:+
Coord C1 exon
chr9:3597829-3597914
Coord A exon
NA
Coord C2 exon
chr9:3598473-3598544
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGC
5' ss Score
6.83
3' ss Seq
TGTGTTTTTTTCCTGTACAGACC
3' ss Score
10.59
Exon sequences
Seq C1 exon
GTGCTATGGAAGAGCTGCACAGTCTGGACCCTCGACGTCAGGAGCTGCTGGAGGCCAGATTTCTGGGCGGGGTCAGCGGAAACACG
Seq A exon
NA
Seq C2 exon
ACCTTGACAAACAACGAATGTTCCAATCACAGCTTTGGAAGTCTGGGCTCCTCCAGTGATAAAGAGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467-11-3,12-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGCTGCACAGTCTGGAC
R:
GAGCCCAGACTTCCAAAGCTG
Band lengths:
128-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]