DreALTD0021016-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000011926 | tpgs2
Description
tubulin polyglutamylase complex subunit 2 [Source:ZFIN;Acc:ZDB-GENE-040704-49]
Coordinates
chr21:11935338-11935708:-
Coord C1 exon
chr21:11935640-11935708
Coord A exon
chr21:11935598-11935639
Coord C2 exon
chr21:11935338-11935501
Length
42 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATT
5' ss Score
5.95
3' ss Seq
TGTGTGTGTGTCTGCTGTAGGTG
3' ss Score
11.76
Exon sequences
Seq C1 exon
GATCAGACGGCCCAGAAAAGCCTCATTTTGATTTGCGCAGTCGCATCTTTGAGCTGGACTCCTGCAATG
Seq A exon
GTAATGGCAAAGTTTGCCTTGTTTACAAGAGCTGCTCTCCAG
Seq C2 exon
GTGTAATGGCCCAGCAGTGTGAGGTGTGGTTCTTGGACCGATCACTTTTCTGGCACTATCTCACCCCCTCCTTCACTGCCTACTACCGGCTTATGATCACTCATCTGGGGCTGCCAGAGTGGCAATATAATTTCACTCCGTATGGCCCCAGCCCACAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011926-8-5,9-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF093465=SMI1_KNR4=FE(24.3=100)
A:
NA
C2:
PF093465=SMI1_KNR4=PD(19.1=52.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCAGACGGCCCAGAAAAGC
R:
AAGGAGGGGGTGAGATAGTGC
Band lengths:
142-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]