DreALTD0021066-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000101036 | traf2b
Description
Tnf receptor-associated factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5345]
Coordinates
chr5:53777953-53780070:+
Coord C1 exon
chr5:53777953-53778053
Coord A exon
chr5:53778054-53778211
Coord C2 exon
chr5:53779850-53780070
Length
158 bp
Sequences
Splice sites
5' ss Seq
AATGTACGC
5' ss Score
4.52
3' ss Seq
TGTGGTCTACGTTTTTACAGATG
3' ss Score
10.05
Exon sequences
Seq C1 exon
AAGAGAGACTGCCAGACTGCCACATTAAGCGTGACGTAATTAAGCGTGACACGCCTCATGACATAACGACGTTTTTTTTTTACAGTACTTGGAACTATTTG
Seq A exon
GTGAGTAACTTCTTCGTGTTTGTTCGTGTTTTCGACGTTCCTATTCCATCGAGTTCGTTACAATTTACTAGTATTTGAAAAGTCTGCGTAGTGTGGTGGTGCTGCTGCGAGTTGCCATTTTTACACACTCTCTCTTGGAGAACCAGGAAACAACCAAT
Seq C2 exon
ATGATCAGCGCTGCAGGCACTCTGTGTAAATGGAAGGATATGGAACGTCCATCTTTACCATCTTCTCTGGACTCAACATTGCCTGGGATATCTCGAGAAGTGCTGTCGGTGTCCATGGAACCGAAATATCAATGCCAGCAGTGCAAAGATATTCTTAGGAAACCTTTCCAAGCACAATGTGGACATCGCTTCTGTGTGTTCTGTTTCAAACAACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101036-0-0,1-0,2-0-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.027
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=39.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCCTCATGACATAACGACG
R:
AAGCGATGTCCACATTGTGCT
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]