DreALTD0021278-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000026048 | tsc1a
Description
tuberous sclerosis 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9111]
Coordinates
chr5:29062209-29062815:+
Coord C1 exon
chr5:29062209-29062252
Coord A exon
chr5:29062253-29062279
Coord C2 exon
chr5:29062643-29062815
Length
27 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
ACATATTATTTTTTTTACAGGTC
3' ss Score
10.28
Exon sequences
Seq C1 exon
AACTTTCTCTTCTCCAAGCCAATCATCAGACCCACACTTGAAAG
Seq A exon
GTAAACAGCATAGCAATAAAGGAAAAG
Seq C2 exon
GTCTTGTGCCTGCAGTGTCGGATGAGCTAGACATGTTACGCAGTCAATTGCTGCTGCTGCATAACCAGTTGCTTTATGAGAGACATAAGAGAGAGCAACATGCGCTTCGTAACCGTCGTCTGTTTGGCCGCATCGTCAACACTACTGCACTGGAAGAGCAAAATAACTCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000026048-20-21,21-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.938 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF043887=Hamartin=FE(2.2=100)
A:
NA
C2:
PF043887=Hamartin=PD(5.8=69.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCAAGCCAATCATCAGACCC
R:
TCATAAAGCAACTGGTTATGCAGC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]