DreALTD0022542-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000062338 | zeb2a
Description
zinc finger E-box binding homeobox 2a [Source:ZFIN;Acc:ZDB-GENE-070912-553]
Coordinates
chr9:26022369-26025606:+
Coord C1 exon
chr9:26022369-26022471
Coord A exon
NA
Coord C2 exon
chr9:26024754-26025606
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
CTCTCCTTGTGTCTCCGCAGGAA
3' ss Score
13.34
Exon sequences
Seq C1 exon
GGGGATCTACTGGACAGTGCTGGGGACTATCTGTCAGGGCTAGAGGACCTGACAGACAGCGAGTCGCTTCTCGCCCGGAAGAAGATTAAGAAGACTGAAAGTG
Seq A exon
NA
Seq C2 exon
GAAAGCGGCCTCACCAGTGCCAGATTTGCAAGAAGGCCTTCAAACACAAGCACCACCTCATCGAGCACTCGCGCCTACACTCGGGCGAGAAACCTTACCAGTGCGACAAATGTGGCAAGCGCTTCTCCCACTCCGGCTCTTACTCGCAGCACATGAACCACCGATATTCCTACTGCAAGCGGGAAGCGGAGGAGCGTGAGGCGGCCAAGCAAGAAAACCACAACAATGGTGGACCCCTGGAGCCCACAGAGCTCCTGATGCGGCGGGCTTACCTGCAAGGCCTTGGGCCTCTGGGCTTTTCAGATCCAGAGGATCAGGCTGAGGACATCACACGAGAAAACACCATCTTAAGAGACGGCACTGAGAGCGGGGCAAGGGAGACGGAAGAGACGTATGCGGAAGTGACTGACAGACAAGAGACAGGTTTGATGGGGGAAGAGGAAATGGAGGGGCAGAGGTTTGACACTCGTAGCCCTGATGGGACAGCAAAAGATGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062338-20-15,21-15-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=NA C2=0.764
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(27.3=17.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.7),PF134651=zf-H2C2_2=WD(100=13.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGACCTGACAGACAGCG
R:
CTTGCCACATTTGTCGCACTG
Band lengths:
182-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]