DreALTD0022545-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000078416 | zeb2b
Description
zinc finger E-box binding homeobox 2b [Source:ZFIN;Acc:ZDB-GENE-080717-1]
Coordinates
chr6:1149464-1160055:-
Coord C1 exon
chr6:1159953-1160055
Coord A exon
NA
Coord C2 exon
chr6:1149464-1151379
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
GTCGTTGTGTGTTTGCGCAGGTA
3' ss Score
8.55
Exon sequences
Seq C1 exon
AGCGAGCTTCTTGACGGGCCGGCAGATTATCTGAGCAGTCTAGATGATATGGCCGACCCCGAGGCCTGTCTGTCCAGGAAGAAGATTAAGAAAACAGAAAGTG
Seq A exon
NA
Seq C2 exon
GTAAGCGGCCGCACCAGTGTCAGATCTGCAAGAAAGCGTTCAAACACAAACACCACCTAATCGAACACAGCCGCCTGCACTCCGGGGAGAAGCCCTACCAGTGTGATAAATGCGGGAAGCGCTTCTCACACTCGGGCTCGTACTCTCAGCACATGAACCACAGATACTCATACTGCAAGCGGGAGGCAGAGGAGCGCGAGAGGCGGCAGAACGGGAGGCCCGAGAAAAGGGACACCTGGAGCCCACGGAGATGCTGCTGAACCGGGCGTACCTACAGGGCATCGGTCCCGCCGGATACCCGGAGCACCCGGAGCGGGAGCCCATCCTGCGGGACGCCCTGAACGGAAGCATTCGGGAGCGGCTCCAGGAGGTGGAGGGAGCGTTCGTCAAAATGAGCCGCAGAGAGCACGACTTCGAGGAGGAGGAGGACGAGAGCGAGAACAAAAGCACGGACGGTGACACTATGAGGGACGAGGAGGAAAATGGAGAGCACTCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078416-7-7,8-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(27.3=17.1)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(68.2=17.2),PF134651=zf-H2C2_2=WD(100=29.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATGATATGGCCGACCCCG
R:
TCACACTGGTAGGGCTTCTCC
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]