DreALTD0022603-1/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000004748 | zgc:100868
Description
zgc:100868 [Source:ZFIN;Acc:ZDB-GENE-040801-33]
Coordinates
chr3:39344595-39345107:-
Coord C1 exon
chr3:39345034-39345107
Coord A exon
NA
Coord C2 exon
chr3:39344595-39344863
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CAGTTGTTGTCATTTTCCAGCCC
3' ss Score
6.44
Exon sequences
Seq C1 exon
TGTGTGGTACGGCACCTCTCAACTCAAGGATAGTGGGAGGACAGAATGCACCGGTTGGCGCTTGGCCATGGCAG
Seq A exon
NA
Seq C2 exon
CCCTTCGACGACTGGTCTACTTGTATATTTGGGCCTACAAAAACTAGCATCATTTGAATCATACTCGATGTCCAGTGCTGTCTCCAATATCATAAAACATCCAAACTACAATAGTGATACTGAAGACAATGACATCACTCTTCTGCAACTGGCCTCAACAGTGAGCTTTTCGAACTACATCAGACCTATCTGTCTGGCTGCATCCGACAGTACTTTCTTCAATGGAACTTTGGTCTGGATCACTGGATGGGGGAACACTGCCACAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004748-3-2,4-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(19.2=80.0)
A:
NA
C2:
PF0008921=Trypsin=PU(41.0=97.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGAATGCACCGGTTGG
R:
TGCAGAAGAGTGATGTCATTGTCT
Band lengths:
183-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]