DreALTD0022696-1/4 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000100294 | zgc:113209
Description
zgc:113209 [Source:ZFIN;Acc:ZDB-GENE-050410-8]
Coordinates
chr4:74835174-74835820:+
Coord C1 exon
chr4:74835174-74835274
Coord A exon
NA
Coord C2 exon
chr4:74835697-74835820
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTTTGT
5' ss Score
5.98
3' ss Seq
ATTCTTCTCCTCTTAAACAGACA
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCTTTATTTGTGTGTAACGCACTTTTATTTTGACAGTCATGTGATGTCATCAGGCGGCGTCACGCTTCTTCGTCGGCTGTGCTGTGATTCATCAGAGAACG
Seq A exon
NA
Seq C2 exon
ACAGAGAAACTCCTGCTGAAGCGACTGAGCTCCACTATTATAAAGATGGCCTTTATTAAAGAGGAGAGTGAAGACCTGAAGATTGAGGAAACAGTCAGATATGAAGATGCTGAGCAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100294-1-0,2-0,3-0,4-0-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.513
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF122303=PRP21_like_P=PU(22.9=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTGATGTCATCAGGCGG
R:
TCTTCAGGTCTTCACTCTCCTCT
Band lengths:
147-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]