DreALTD0022892-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000044847 | zgc:171599
Description
zgc:171599 [Source:ZFIN;Acc:ZDB-GENE-080219-33]
Coordinates
chr17:49535693-49536945:-
Coord C1 exon
chr17:49536845-49536945
Coord A exon
chr17:49536768-49536844
Coord C2 exon
chr17:49535693-49535991
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
3' ss Seq
AATCTCTTTAATCTTGGCAGATC
3' ss Score
7.57
Exon sequences
Seq C1 exon
GGTTTCAAGACGATTGTTGCTTCTTCTGACAGAGTTGGACAAGTTCCAGTGTCATCTGCCCTGGTCGTCGGCTCTTCGCGCATCACTGGGACCAAACAACA
Seq A exon
GTAAATATCAGTTTATATCTGCTCGAGTAAAGAGGCCTTTAGTTTGTGCCACAACTCTATCAGCACCCACAATAGAG
Seq C2 exon
ATCTCTTCCATCTATTAAGCTCCTCCTCCTGTAGTGAAGCTCCTCCTTCCTTTTAGTTCAGCTATAAATTCTGGAATATTCCCATCTGATTGAAGTGAAATTGCAGAGTTTATTGAAGGACAGAAAGAGCATGAGTGATCCAGAACTGTGCAGAGTTAAACAGGAAGAGACCGATGACAGAGAGAACATGAGTGACTCAGAACCCTGCAGAATTGATCGGGAAGGCACCAAGGACAGAGAGAACATGAATGATCCAGAACCCTGCAGAATTAATGAGGAAGAGACCGAAGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044847-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.989
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCATCACTGGGACCAAACAA
R:
TGCACAGTTCTGGATCACTCA
Band lengths:
175-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]