DreALTD0022910-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000074365 | zgc:171901
Description
zgc:171901 [Source:ZFIN;Acc:ZDB-GENE-080220-13]
Coordinates
chr15:716447-718674:-
Coord C1 exon
chr15:718586-718674
Coord A exon
chr15:718507-718585
Coord C2 exon
chr15:716447-716591
Length
79 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTTCATCTTGTTTTTGACAGAGA
3' ss Score
7.16
Exon sequences
Seq C1 exon
ATTTTAGACAGGGGACTTTTATGTCGTTTCGTCGGTGACGTCATCAGTCAGCTCCGCGCTCCTGTTTGTTCTGAACAGGCTCGACCAAG
Seq A exon
GTTTGTTTTTAAGCAGTTGGCGACTATATTAATGTATGCCGGTGGCGTTTATTCGTGTTTACAAGCTGTGTAAATTGAG
Seq C2 exon
AGAACAGAACAGCAGATTATTATAAAGATGGCGTTTATTAAAGAGGAGAGTGAAGATGTGGAGATTGAAGAAACATTCACAGTCAAACATGAAGAGACTGAAGAAGCTTTCAGAGTCAAACATGAAGATCCTGAGGAACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074365-1-5,2-5,3-5-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.975
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACGTCATCAGTCAGCTCC
R:
TGACTCTGAAAGCTTCTTCAGTCT
Band lengths:
173-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]