DreALTD0022993-2/2 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000010782 | zgc:55621
Description
zgc:55621 [Source:ZFIN;Acc:ZDB-GENE-040426-762]
Coordinates
chr15:35102443-35102957:+
Coord C1 exon
chr15:35102443-35102497
Coord A exon
chr15:35102498-35102501
Coord C2 exon
chr15:35102676-35102957
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAAT
5' ss Score
3.81
3' ss Seq
CCATTTCTCCCTTTCTCTAGTAT
3' ss Score
8.75
Exon sequences
Seq C1 exon
TATGTTCGGGTTTTATGACGATGATGAAACTGTGATCGATATGGAGTATCAGGAT
Seq A exon
GTAG
Seq C2 exon
TATTATGCAAGTGACGCTTTTGGCCTGAAAACACTGAACTCAGAAGGTGCCGTAGAGAAGTGTGTTGTCTCTGGTGTTCAACATACACACTGGCATTCAGACTACAGTGTCTACCAGAAGTGCATAGAAAAGTGGCTCACGTAATATTCAGAAGGAAAGCAGACCATCTTATTTCTCAAGCACAATCGTGTGTGTGTGTGCGTGTGTGTGATGATTGTTCTTATTGATAATCTTAGATGTTCACTTTTGATAATAAATTCAGTAACTGATGTTGTGTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010782-12-8,13-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0208910=Palm_thioest=FE(6.9=100)
A:
NA
C2:
PF0208910=Palm_thioest=PD(14.2=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGATGATGAAACTGTGATCGA
R:
ACACACTTCTCTACGGCACCT
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]