DreALTD0023247-2/3 @ danRer10
Alternative 5'ss
Gene
ENSDARG00000014680 | znf710a
Description
zinc finger protein 710a [Source:ZFIN;Acc:ZDB-GENE-030131-5559]
Coordinates
chr18:26104218-26107664:+
Coord C1 exon
chr18:26104218-26105572
Coord A exon
chr18:26105573-26105752
Coord C2 exon
chr18:26107473-26107664
Length
180 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CTGTTATCTTTCTCTCCCAGGGT
3' ss Score
11.17
Exon sequences
Seq C1 exon
AGAGTGAAAACTCCCTCGGTAGACGGATGCAGATCGACCGGCTAGATATCAACGTGCAAATTGACGAATCGTACTGTGTGGATGTGGGTGAAGGTTTGAAGAGATGGAAGTGTCGCATGTGTGAGAAGTCCTACACTTCAAAGTACAACTTGGTTACGCACATTCTAGGTCACAATGGCATTAAACCACATGAGTGTATGCACTGTGGGAAACTCTTCAAGCAGCCCAGCCACCTTCAGACACATTTGCTTACTCACCAGGGCACACGGCCACACAAGTGCACTGTCTGCAAGAAGGCCTTTACCCAGACTAGTCACCTTAAACGCCATATGTTGCAGCATAGCGACATCAAGCCTTACAGTTGCCGTTTCTGTGGCCGAGGCTTTGCCTATCCTAGTGAGCTGCGCACCCACGAAACCAAGCACGAGAGTGGACACTGTCATGTCTGCACACAGTGTGGAATGGAGTTCCCCACACATGCTCACCTCAAGCGCCACCAG
Seq A exon
GTCAGCCACCAGGGCCCAACAACCTTTCAGTGCACTGAATGTCATAAGTCCTTTGCCTACCGTAGCCAGCTTCAGAACCATCTGATGAAGCACCAGAATGTGCGGCCCTATGTCTGCTCAGAGTGCGGCATGGAGTTTGTGCAGATCCACCACCTGAAGCAGCACATGCTTACACACAAG
Seq C2 exon
GGTATGAAGGAATACAAATGTGACGTCTGTTCTCGTGAGTTCACCCTCTCTGCCAACCTGAAGCGACACATGCTGATTCACACCAGTGTGCGCCCTTTCCAGTGCCATGTCTGCTTCAAGACCTTTGTTCAGAAACAGACACTTAAAACGCACATGATTGTCCACTTGCCTGTGAAACCTTTTAAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014680-4-3,5-3,6-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.449 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF0009621=zf-C2H2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.4)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=40.6),PF134651=zf-H2C2_2=PU(65.4=26.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATAGCGACATCAAGCCT
R:
ATCAGCATGTGTCGCTTCAGG
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]