DreEX0000047 @ danRer10
Exon Skipping
Gene
ENSDARG00000074221 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr11:5682944-5686334:+
Coord C1 exon
chr11:5682944-5683046
Coord A exon
chr11:5686054-5686077
Coord C2 exon
chr11:5686186-5686334
Length
24 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGCTTCACTGGCAGCAC
3' ss Score
7.48
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
ATCTTTCTGCGTGTGGCAGAGGAGACTGGTGTGGATGCAGACCCAGGAGATGTGCCAGTGTCTCAAGAACCCCAGGGAGCGCCATCTGAGGACAGAGATGCGG
Seq A exon
CACGGAAACGGTCAATCAGGAAAG
Seq C2 exon
AGGCTCAGGAGACAGATCCGCTGAGCGGGGATGGTCAGAGCGACAGCGCTCCTCTCACAGGCTGCTTCCACACATGTCAGCAGCTTCGAGCACTTTTCACCAAAAGACTGAAGTACGCTTTCCGCAGTCGCAGAGGGATTTTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074221_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.657 A=NA C2=0.300
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSDART00000113281fB2
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACTGGTGTGGATGCAGAC
R:
TCAGCGGATCTGTCTCCTGAG
Band lengths:
106-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]