DreEX0000165 @ danRer10
Exon Skipping
Gene
ENSDARG00000063407 | ADAMTSL4
Description
ADAMTS-like 4 [Source:HGNC Symbol;Acc:HGNC:19706]
Coordinates
chr16:1292452-1294474:+
Coord C1 exon
chr16:1292452-1292596
Coord A exon
chr16:1293060-1293076
Coord C2 exon
chr16:1294192-1294474
Length
17 bp
Sequences
Splice sites
3' ss Seq
TTGGCGCCATCTTGCGACAGAAT
3' ss Score
4.42
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCTCTCGCTCCTGTGGTGAAGGGCTCCAGACGCGAGAGTTGCGCTGCCTCACACCTGACAAGCAGCACAGCGCCACCTGCCATCCAGACGCCAGACCTGCACACCAGCAGCCCTGCAACACCATTCCCTGCAGTCCCTTCGAAG
Seq A exon
AATGATAATAATAACAG
Seq C2 exon
ATGAGAACTGTAAAGACAGACGGCATAACTGTGTAATGGTGGTTCAGGCTCGGCTCTGCGTCTACTCCTATTACAAGACGGCCTGCTGCGCCTCCTGTACCCAAAGTGCTCAGCGGGCCAAAAGACATTAAGCCTATGCACAGACACGGCCAATCACAGAGCGCTTTACAGTTCTACCAGCCAATCACAGGCAGGTCAGATTCAATTGGAGAGATTTCCAGGTTGAACTGAGCTGAGATCAGCATCCTCTTAAAGGGCCAGTTCACCCACAAATGAAAACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063407-'12-15,'12-14,13-15
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(84.3=87.8)
A:
NO
C2:
PF086866=PLAC=WD(100=75.0)
Main Inclusion Isoform:
ENSDART00000092627fB11
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCTGCAGTCCCTTCGAA
R:
GCAGCAGGCCGTCTTGTAATA
Band lengths:
111-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]