DreEX0000357 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68216114-68223180:-
Coord C1 exon
chr5:68223108-68223180
Coord A exon
chr5:68222960-68222980
Coord C2 exon
chr5:68216114-68216213
Length
21 bp
Sequences
Splice sites
3' ss Seq
ATTCCTCTTGGTTTTTCTAGGAA
3' ss Score
10.41
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
ACCACCACTGAAAAACATCGCATGAGTTTCCCTGAAACCGTTGATGAGATCCTGGATGTGTCTGAAGATGAAG
Seq A exon
GAATTGCACAGCTAACATTAG
Seq C2 exon
GCGAGGAGCTGCTGGGAAACGAGGGCGCCAGGTATTTGATGAAGATGGAGGACATAAAGGACCATGATGAGGATTTCCTTTCCCCCAAGAAAGTTCTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-'22-29,'22-27,23-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.540 A=0.533 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCACTGAAAAACATCGCA
R:
TTCATCAAATACCTGGCGCCC
Band lengths:
116-137
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]