DreEX0000431 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3484444-3489166:-
Coord C1 exon
chr25:3488940-3489166
Coord A exon
chr25:3486336-3486518
Coord C2 exon
chr25:3484444-3484474
Length
183 bp
Sequences
Splice sites
3' ss Seq
TGCATTGTGTGCATCTCCAGCAC
3' ss Score
6.29
5' ss Seq
GAGGTATAC
5' ss Score
6.64
Exon sequences
Seq C1 exon
GGTGTTAAGGAGGTGACTGATGGCATGAGGGGAGAACTGCAGCCTGGTGTGTTCTGGGATAGCGGAGGATCCAGAGGACGAGCTGCACTTGAGCAAGGAAAAGGGAGGAAAAGTGACACCACCAGCGCCGAGAACCTAAAACCTCCAGAGGAAGGGATGGCTGACAGCAGGTCTCTGGGAAGAGAGGCTTGTGTTTCACCAAGACAGCTGGGCAGGAGTGCAAGAAG
Seq A exon
CACTGACAGGGCAGCGCAGCGTGGTGAGGAAGATGAGAAGCAGGAGGAAAACACAGCTATAGGTAGCCCAGTGACAAAGCTCCATGTAGGCAAACCCTCCCAACCTGCAAGCCGCCATAATGGAGACCTTGAGTCTGTCTTTGATGATAGCACTTTAAGTGAGCTGTCCGAGGACGACAGGAG
Seq C2 exon
GTCTCCCTCTTCGAGGCGTAAGAAAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATGGCATGAGGGGAGAA
R:
CTGCTCTTTCTTACGCCTCGA
Band lengths:
243-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]