DreEX0000432 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3488940-3497722:-
Coord C1 exon
chr25:3497652-3497722
Coord A exon
chr25:3494657-3495361
Coord C2 exon
chr25:3488940-3489166
Length
705 bp
Sequences
Splice sites
3' ss Seq
GTCTAATTATGCAAACAAAGGCA
3' ss Score
-2.16
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
TTCATCAAGAGGATCTCAAAGATGACCCAAAGAGTGAAAGCAGTTCTGACGCAAGTGATCATGAAGATCAG
Seq A exon
GCAAAAGAAGCATTTCAAGCATCTTCTGTAGACATAAATAGCCCATCTAACCATGAAACACTGGAGCGTTTCCAATCAAACCCTCCAACAGAGGAGGAGAGTACGGATGAGATGCCCTGGGAGGAACGCTATGAGAAAATCTGGGTGGAGAACGAAAAGAAGGAGACCAAATCTCAATACAAAAACGTAGCCGCAGAACTGAAGGAGAGATTCGGAGAACTGGAGCACAAGGAAGAACCTGACCTTTCAGAGCAAGAGGAACCGAAAGAGGTGGAAATAAAAGCAGATGAAGAAGATTCCAGTGAGGATGAAGGAGATCCAATAGTGCGACCCATCGCCAGAGCCAGAAGTGCCATGCTTTTGCCCATCCCGGAGCAGAGAGAGTCAGGATTGGAGGACTCGCTGTCTGAAAGTGTCCATCACACGGTTAGCATTGAGGCTAGCGATGCTGAGCCACCCAGTGATCCACACCACTCTCAAAGCATCCCAGATGTCTTGAAGAAGTCAGAAAATAGAGCAGATGATGATGAAAACGAAGCCGATAGAGAACCAGAACCTGAAAGTAACATAGATGAAGATCCTCAAGACGTTCCTCAACCTTCATCGCTTGTTGATAATGAGCTGGAGATCCCAGATAAAGTTGTAGAAGTGCCCTCCTCTGAGTCTGAGGATGGTGAAGGAGGCCTGTTGAAGTCCAAACTTGAG
Seq C2 exon
GGTGTTAAGGAGGTGACTGATGGCATGAGGGGAGAACTGCAGCCTGGTGTGTTCTGGGATAGCGGAGGATCCAGAGGACGAGCTGCACTTGAGCAAGGAAAAGGGAGGAAAAGTGACACCACCAGCGCCGAGAACCTAAAACCTCCAGAGGAAGGGATGGCTGACAGCAGGTCTCTGGGAAGAGAGGCTTGTGTTTCACCAAGACAGCTGGGCAGGAGTGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.996 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGGATCTCAAAGATGACCC
R:
CTTCTTGCACTCCTGCCCAG
Band lengths:
294-999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]