DreEX0000434 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3503515-3504329:-
Coord C1 exon
chr25:3504230-3504329
Coord A exon
chr25:3503943-3504032
Coord C2 exon
chr25:3503515-3503588
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCAACTGAATTCCTTTATAGACT
3' ss Score
6.15
5' ss Seq
TGGGTAGGC
5' ss Score
6.03
Exon sequences
Seq C1 exon
TCGGGTTCTGAGAGTCCACAGAAAAAGCAGGCCAATGCTTCTCACACTCCTTCCAAATCACATAAATCCATGTCCAGTATTTGTGAGGAGAACACTGAAG
Seq A exon
ACTTCTTATACGTTCCCTCCTTCGTAAGAGGAGGGAGGGGCGTTAATTTATTGAGAAGTTTAAACCAATCAGGAGGCTGCAGGCTGATGG
Seq C2 exon
TTGCAAAAAATGATGATGATGATGATGATGATGATGCTGCTGCTGCTGATGATGATGAAGAAAAAGAAATACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.323 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000171863fB32
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGTTCTGAGAGTCCACAG
R:
TCTTTTTCTTCATCATCATCAGCAGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]