DreEX0000435 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3510563-3512035:-
Coord C1 exon
chr25:3511878-3512035
Coord A exon
chr25:3511724-3511756
Coord C2 exon
chr25:3510563-3510599
Length
33 bp
Sequences
Splice sites
3' ss Seq
TCCACACTCATCTGTTGTAGCAG
3' ss Score
6.27
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
ATGTTCACATTTGATCATCGAGCATGGGACGAAGAAAAGAGCCCTCCAGTCACCCTCCCATTTTACCGCCAACAAAAAGAAACGCACATCCGCGCTCGGCAGCCCTGGCGGACTCGGGGCTGGTTTGCCTTTAGGAGGGCCCGCTCTGGATAAAGATG
Seq A exon
CAGCAGGAAGCAGCTCCGTAGCAGCAGGGAAAG
Seq C2 exon
ATACAGAGGATAATTCCCACACAGACTCCATCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(22.4=27.8)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAACAAAAAGAAACGCA
R:
GCTGATGGAGTCTGTGTGGGA
Band lengths:
128-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]