DreEX0000438 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3449793-3453842:-
Coord C1 exon
chr25:3453593-3453842
Coord A exon
chr25:3452138-3452195
Coord C2 exon
chr25:3449793-3449838
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTGATATCTTCAGCTT
3' ss Score
7.72
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTCGAATGAGCGTCTAGCGGAGGCGAACACTAAACTCCTGAGCGAGCGGCAGCGCAGTAAGTCTCTGCTCAGCGGCAGCTTCATGAACGCAGGGTTAGCGGCTCCAGCTCTGGATGTGTCGTCTCTGGGCTCCGTCGGGGCCTACGGTGCGTCTCTGGGGCCCCTGAACCGCAGCCTGGGCCTCGGGACGCCTCTGCTGGGCACGCTGGGAGAATCACAGAGCAGCCGCGTGGAGGCATACCTGGCCAAG
Seq A exon
CTTCTAGCTCAAAAGTCTGTTTCTCACCTGTCCTCTCTGCAGCCTGATACCTGAGCAG
Seq C2 exon
ATGCAGACCGAGCTGGAGAAGAATATATCGAAGGAGCTGGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.137 A=0.294 C2=0.000
Domain overlap (PFAM):
C1:
PF120013=DUF3496=PD(42.3=52.4)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000171863fB33
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGGTGCGTCTCTGGGG
R:
TTCTTCTCCAGCTCGGTCTGC
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]