DreEX0000445 @ danRer10
Exon Skipping
Gene
ENSDARG00000099768 | ANKRD7
Description
ankyrin repeat domain 7 [Source:HGNC Symbol;Acc:HGNC:18588]
Coordinates
chr25:3462936-3465249:-
Coord C1 exon
chr25:3465156-3465249
Coord A exon
chr25:3464920-3464946
Coord C2 exon
chr25:3462936-3463013
Length
27 bp
Sequences
Splice sites
3' ss Seq
TGTAGTCGCTCTTTCCACAGCTC
3' ss Score
8.31
5' ss Seq
GGGGTTGGT
5' ss Score
0.32
Exon sequences
Seq C1 exon
GTTAGAAATTGAGAACGCCAGACTAGAGGCTACAGCCAAACAGCAGACCAACCGCATCGAGACACTCCAGAAGGGCGTAACAGAGGGAGCAGCG
Seq A exon
CTCTCAGGCTCAGCAGCTGGAGACGGG
Seq C2 exon
GTCAGGAATCGTTTGGAGGATCTGGTCACAAACCTGCAGAGCAGTAAGATGACGCTAGAAGAGCAGCTCAACCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099768_MULTIEX3-5/9=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.847 A=1.000 C2=0.962
Domain overlap (PFAM):
C1:
PF150351=Rootletin=PU(7.4=83.3)
A:
NO
C2:
PF150351=Rootletin=FE(19.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACACTCCAGAAGGGCGTAA
R:
TCTCGGTTGAGCTGCTCTTCT
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]