DreEX0000709 @ danRer10
Exon Skipping
Gene
ENSDARG00000068484 | ATL2
Description
atlastin GTPase 2 [Source:HGNC Symbol;Acc:HGNC:24047]
Coordinates
chr11:44191949-44198491:+
Coord C1 exon
chr11:44191949-44192380
Coord A exon
chr11:44196933-44196947
Coord C2 exon
chr11:44197979-44198491
Length
15 bp
Sequences
Splice sites
3' ss Seq
CTCACCTCACGCTCACACAGAGG
3' ss Score
5.8
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGTGTGGCGGCGAGCGTCCCTACATGTCTCCGTCTGCTCTGGATCTCCGCCATGGTGAGCTGAAGCAGGTGTGTGTGTGTCAGTTCCGCTCCGTCAAGAAGATGGGTGGAGAAGAGTTCAGCCGACGCTACCAGGAGCAGCTGGAGCAGGAGCTGGAGGAGTGCTACGCTAGCTTTAGCAAACACAACCAGGGCAAGAACATCTTTCTAGCGGCGCGTACGCCGGCGGCGCTGCTCGCCCTGATGCTGCTGCTGTACGCGTCGGCGCTGATAGCGGGCTGTGTGGGCATCAGTACACTAGCGGTGCTCTGTGACCTGCTGCTAGCCGCCGCGCTGCTCTCGCTCTGCGTCTGGACCTACAGCAGATACTCCGGAGAGTTCCGCGAGATCGGCGCCGCCATCGACCGTCTGGCCGAGACACTCTGGGAGCAG
Seq A exon
AGGACGCCCAGGAAG
Seq C2 exon
GTCCTCTCCAAGCTGATGGAGGTGTTGCGGAGCCGGCTGCGGCTGAAGCCCACCCCCAGACAGAGACTGCCCTCCAATAACAACCTCAAGAAGAGGAAGTAGATCCGCGTCTGCGCTGACGTCACTTCCTGCAGACGCTGAGCGCCAGCAGTGCTACGGTAACACTAGCGGCGTTAGCAGAGCTAGCGCTGAACTCAGAGACTCTCTGCTGCTGCGCTCCTCCACCCATCCACACGCTGATCTCTGTACAGATTTTAAACTCCAGCATGACCATCCACAGCGTTTTCTACACGCTGCTTTTGTAGCAGGACAAACCATGGAGTCATCCTCATCTGCAGGACTACCACACACACACACACACACACACACACACACACACACACACACACACACTTAGTTTTATACGTCTCCATTCCTCTGCTCTGAGCTTCATCATTCCGGAATGTTCAGTCGTCTTCATCATGATGTTTCTTTAATTTATTTTGGAATTTGATTAAAATGGGTCACTGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068484-MICROEX3
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.424
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000085222fB62
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTGGACCTACAGCAGAT
R:
CAACACCTCCATCAGCTTGGA
Band lengths:
113-128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]