DreEX0000787 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52369703-52378005:+
Coord C1 exon
chr9:52369703-52369906
Coord A exon
chr9:52374948-52375313
Coord C2 exon
chr9:52377603-52378005
Length
366 bp
Sequences
Splice sites
3' ss Seq
TATATATTTTGCTTGCCCAGGAT
3' ss Score
6.9
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
AAGCTGTGCAGTAAATCGTCAGGCGTCTCCATCAACAGCGACAGCCAATCAGCTTCCAGCTCTGACATCTCCACTGATGCCCTCAGCAGTTCAGACTCTGATGACCTGGAGGATGAAGATGATGATGATGAGGAAGATGATGATCAGAGTGATGACAGTGTGGACTCTGAAAAGTGTGGAAAAGAGCAGAAAGCTATCCGCAAG
Seq A exon
GATGAAATGCACACAGACAGGAAGCAGAACTACCACACTTTAGGGAAGCAAACACAGGATCTTCAGAGTTCATTAAAGCTGTCGAAACACATCCAGGCCTTCAGACCCACAGAAGAGTCAAGCAAACACACCAGTGTCATTCAGCCCACAGGGTTAGCAGTCAGTGCTAAACCACTGGCTCTAGTGACGAGACACAGAGACACCCCGTCCCATAAAGACTCAAACACTGACCTGCAGCCATCACCTCCTAAACAAGCCGCTTCTAGCCCTACAGCAAAAACACCGTCTGTGTGTTCCTCTCCTACACCTCCGGCCTGCGGATCCAGGAATAACCTCAGCCTGAGCCTTCACCACTTCAGCAAACAG
Seq C2 exon
CCCTCGCTACCTCAGGATCTGAAAAATGAAGTACAGAGAATCCAAAATCTTCCATGCAGCAATCCATTCCTCAAAACTCTTCCTACCGAGAATAATCATCATCATCCTGGTGAAGTACAGGAGGCTCCTCTCGCCCTCATTACCAAACCTCGCTCCCATAAACCACTGCTGAAAGCCACAAATCCAGCAATTAGCAGTCCTATTAATCTCAGTACTACAACACGCAGCTCTGCTTTACCCAAACCTGGCCAAAAAACAGGACAGAGGATTATAAAGAGGGAGAGAATCTCATTGGCGGAGAGCATTATTGGGGCGGAGTCTGAGCTCATGAATAATAAAGACTCTGATGACTCGTTAATGGAGGACGAGGATGGAAATGACGCTTCAGATGACAGTGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.868 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTAAATCGTCAGGCGTC
R:
TGGTAATGAGGGCGAGAGGAG
Band lengths:
343-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]