DreEX0000931 @ danRer10
Exon Skipping
Gene
ENSDARG00000101248 | BX321870.1
Description
NA
Coordinates
chr4:49804081-49929860:-
Coord C1 exon
chr4:49929776-49929860
Coord A exon
chr4:49925540-49925796
Coord C2 exon
chr4:49804081-49804674
Length
257 bp
Sequences
Splice sites
3' ss Seq
GTTTTATTTATTTATTTTAGACC
3' ss Score
8.75
5' ss Seq
AGGATCCAC
5' ss Score
-15.82
Exon sequences
Seq C1 exon
ATGGCGTTCATTAAAGAGGAGAGTGAAGATGTGAAGATTGAAGAAACATTCACAGTCAAACAGGAAGATCTGCAGGAACTAACAG
Seq A exon
ACCCAATTGAAGAGAATAAGGTGAGTAAAGAGAAGGAACATCATGTCAAAATTGAGGAAAAAACTCATTTACAGACTGATGGTATTTTGAAAAGGAGAGACAAGAATTGTTTCACCTGCACTCAGTGTGGAAAGAGTTTCAGCCAATCATCATCCCTTAATCAACACATGAGGATCCACACTGGAGAGAAACCTTTCACATGCACTCAGTGTGGGAAGAGTTTCAGCCAATCATCAAACCTTAATCTACACATGAGG
Seq C2 exon
ACCTGATGGTGCTGAAAGAAGAGACTCAATGGAATGAAATGGAAGAGAAACATCAAGACATAACGACTGATGAAAAACCCACACTCACTAAAAAGACTTCATTACGCGGAAGACCTCGGAAATCCAAATCTTTTTTCAGCAGTAAACAGTGTAGAAAAAGTTTCAGTCAAAAGCCAAAGCTTGATGTTCACATGAGGGTTCACACAGGGGAGAAACCTTACACCTGCGAACAGTGTGGAAAGAGTTTTCCTAAAATCCATGGCTTTAAGGCCCACATGAGAATTCACATTGGAGAGAAGCCGTACAAATGCCAACAGTGTGGAAAGAGTTTTAAGCAAAATAGCAACCTTGAAGTTCACATGAGAACTCACAATGAAGGAAGAATTTTTACTTGCACACAGTGTGGAAAAAGTTTTGCTAAAAAACACAACCTTAACATCCACATGAGGATTCACACTGGAGAGAAACCTTACACATGCACAGAATGTGGTCAAAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101248_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.196 C2=NA
Domain overlap (PFAM):
C1:
PF122303=PRP21_like_P=PU(28.0=89.7),PF102634=SprT-like=PU(16.0=51.7)
A:
PF122303=PRP21_like_P=PD(71.0=34.9),PF102634=SprT-like=PD(83.0=41.3),PF0041217=LIM=WD(100=22.2),PF127602=Zn_Tnp_IS1595=WD(100=24.3),PF134651=zf-H2C2_2=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=13.8),PF134651=zf-H2C2_2=WD(100=13.8),PF087906=zf-LYAR=WD(100=11.1),PF134651=zf-H2C2_2=WD(100=13.8)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGTTCATTAAAGAGGAGAGTG
R:
TTTCTCCCCTGTGTGAACCCT
Band lengths:
299-556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]