DreEX0000950 @ danRer10
Exon Skipping
Gene
ENSDARG00000102596 | BX324179.2
Description
NA
Coordinates
chr4:34134654-34138370:-
Coord C1 exon
chr4:34138270-34138370
Coord A exon
chr4:34137405-34137496
Coord C2 exon
chr4:34134654-34136910
Length
92 bp
Sequences
Splice sites
3' ss Seq
AACTTTAATGTCGTCATCAGAAG
3' ss Score
3.79
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TCCACAAACAGCATTCTCACATATGTGTTTTTGTTTTCCAGGTGAGACAGAGCAGTGTGCAACGTGAAAGCAATTGCAACATCAGTGGAGCGATTATTCCT
Seq A exon
AAGCTGCACGGAACATCTCCCAGTCTACATGATCAAAACATTCTTGAAGTATGGAACTCGATTGGTCCGTCCAGCTTTGAAACGTCTTGAGG
Seq C2 exon
ACTTAATTGAAGAGAATGAGAGGAAAGAGGAGGAACATCATGTCAAAATTGGGGAAAAAACTCATTTACAGACTGATGGTATTTTGAAAAGGAGAGACAAGAATTGTTTCACCTGCACTCAGTGTGGAAAGATTTTGGCAAGCAAAAGCAAACTTAAGATTCACATGATAAGCCACACTGGAGAGAAACCATTCACATGCACTCAGTGTGGGAAGAGTTTCAGCCAATCATCACACCTTAATGACCACATGATGATCCACACTGGAGAGAAACCATTTACCTGCACTCAGTGTGGGAGGAGTTTCAACCGCTCATCACACCTTAATCACCACATGAGGATCCACACTGGAGAGAAACCATTTACTTGCACTCAGTGTGGGAAGAGTTTCAACCGCTCATCACACCTTAATCAACACATAAGGATCCACACTGGAGAGAAACCAATAACGTGCACTCAGTGTGGGAAGAGTTTTCGCCAATCATCATCCATTTATAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102596-'1-1,'1-0,2-1
Average complexity
C1
Mappability confidence:
67%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.160
Domain overlap (PFAM):
C1:
NA
A:
PF0090015=Ribosomal_S4e=PD(25.0=81.8)
C2:
PF0041217=LIM=WD(100=15.1),PF132401=zinc_ribbon_2=WD(100=15.1),PF134651=zf-H2C2_2=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=10.6),PF134651=zf-H2C2_2=WD(100=10.6),PF132401=zinc_ribbon_2=WD(100=15.1),PF134651=zf-H2C2_2=WD(100=10.6)
Main Inclusion Isoform:
ENSDART00000170069fB85
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTGCAACGTGAAAGCAA
R:
ACACTGAGTGCAGGTGAAACA
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]