DreEX0002030 @ danRer10
Exon Skipping
Gene
ENSDARG00000088367 | CABZ01069016.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7FFC8]
Coordinates
chr4:72349118-72372221:+
Coord C1 exon
chr4:72349118-72349269
Coord A exon
chr4:72367972-72368123
Coord C2 exon
chr4:72369653-72372221
Length
152 bp
Sequences
Splice sites
3' ss Seq
TATTTATTTATCTAAAACAGGAA
3' ss Score
7.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GAAAAATGTCTCCAAAATCCAAAAGCTCCTGCTGAAGTGACTGATCTTCATGTGAAACACTGTTATAAAGATGGCGCTTGTTAAAGAGGAGTGTGATGACGTGAAGATTGAAGAAGTAATAATTAAGCAGGAAGATCTGGAGGAGCAAACAG
Seq A exon
GAAAGTGTCCAAACACAGAGGACAACACCTGCTGAAGCGAATGATCTCCATGTGACGCACTATTATAAGGATGGAGTTCATTAAAGAGGAGAGTGAAGATGTGAAGATTGAAGAAATGATAGTCAAACGAGAAGACTCTGAGGAACAAACAG
Seq C2 exon
ACCTGAAGCCATTTGTGTGTGAAAAGAGTTTCTCAAGCAGAGAATCCTTGAATACTCACCTAAATAGTCACAGTGGAGAGAAACATCACTCCTGCAAACTGTGTGGGAAATCTTTTCCCTTAAAACAATCTCTTGATTCTCACTTGAGTTTTCATGCTGGATTGTTGCCGTTCATATGTTATGAGTGTGAAAAAGGTTTCAAACTTAAAGGCACCTTTAAAAAGCACATGCTAACGCACTTTATAGATGGCTTTTTTACATGCCAGCTGTGTGGAAGGAAATTCAATACCTGGGGATACTTTGAGCGGCACAGGAGAGTTCACACCGGAGAAAAACCTTTCAGCTGCCAACAGTGTCCAAAGACGTTTGCTCGAAAAGAACAACTCAAGCTCCACATGAGAGTTCACACTGGAGAGAAACCGTTCACGTGCCAACAGTGTGGAAAACGTTTTGCTCAAACAGGACAACTCAAAATCCACTCGACAGTTCACACCGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088367_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.003
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=PD(42.9=4.3),PF134651=zf-H2C2_2=WD(100=8.9),PF0009621=zf-C2H2=WD(100=8.2),PF139131=zf-C2HC_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=9.3),PF134651=zf-H2C2_2=WD(100=8.9),PF134651=zf-H2C2_2=WD(100=8.9)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGCTTGTTAAAGAGGAGT
R:
ACGGCAACAATCCAGCATGAA
Band lengths:
252-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]