DreEX0002234 @ danRer10
Exon Skipping
Gene
ENSDARG00000076357 | CABZ01102039.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F894]
Coordinates
chr12:10279-13566:-
Coord C1 exon
chr12:13463-13566
Coord A exon
chr12:10916-10988
Coord C2 exon
chr12:10279-10471
Length
73 bp
Sequences
Splice sites
3' ss Seq
AATGTCTGTTTATATTCCAGTCT
3' ss Score
7.41
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
GCGGAGGAGACGAAGGTTCTGCGTCTTCAGCTGGAGGTTTCTCAGGTTAAAGCAGACCTGGAGCGCAGACTGCAGGAGAAAGAAGAAGAGTTTGAGGCCGCCAG
Seq A exon
TCTTTTAACTCTTCAGTTTTTCCACCTCAGCCTTTATTTCCTGTCTTTTAACTAACACTGAATCACCATCAGG
Seq C2 exon
GAAGAGCCACCAGAGGGCGCTGGAGTCTCTGCAGGCCGGTGTGGATGTGGAGTCGAAGGCTAAAACTGAAGCCACTAGACAGAAGAAGAAGCTGGAGAGCGATCTCGCGGAGCTAGAGCTGCAGGTGGAGCAGCAGAAGAAGAGCAACAGCGAACTGATCAAGAGCAGCAAGAAGATGCAGCAGCAGATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076357_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=0.000 C2=0.685
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.6=100),PF097284=Taxilin=FE(15.2=100),PF064286=Sec2p=PD(32.0=91.4)
A:
PF0157614=Myosin_tail_1=PD(0.2=5.3),PF097284=Taxilin=PD(2.2=26.3)
C2:
PF0157614=Myosin_tail_1=FE(13.4=100)
Main Inclusion Isoform:
ENSDART00000159183fB207
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGACTGCAGGAGAAAGAA
R:
CTTCTTCTGCTGCTCCACCTG
Band lengths:
183-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]